Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs1662941 chr2:30674431 T/A 5.86E-14 118 38.58 46.23 12.93 KM Plot
THYM rs1662942 chr2:30674259 A/C 5.86E-14 118 38.58 46.23 12.93 KM Plot
THYM rs1662944 chr2:30673060 C/G 5.86E-14 118 38.58 46.23 12.93 KM Plot
THYM rs1662949 chr2:30671843 C/G 5.86E-14 118 38.58 46.23 12.93 KM Plot
THYM rs1662955 chr2:30670973 T/C 5.86E-14 118 38.58 46.23 12.93 KM Plot
THYM rs1662958 chr2:30676296 T/G 3.24E-7 119 38.58 46.23 13.23 KM Plot
THYM rs1680058 chr4:1220043 G/C 6.47E-5 118 11.73 39.75 42.82 KM Plot
THYM rs1680068 chr4:1203159 T/C 8.53E-5 115 11.73 38.48 42.73 KM Plot
THYM rs16829413 chr3:118904916 A/G 0.000143 119 6 35 45.87 KM Plot
THYM rs16847625 chr1:227499198 C/T 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs16868088 chr4:12508533 A/G 9.42E-7 119 38.33 57.27 12.78 KM Plot
THYM rs16874544 chr6:85127929 A/G 0.000186 119 36.4 49.4 53.63 KM Plot
THYM rs16887066 chr4:12520602 A/G 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs16887255 chr4:12576478 T/C 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs16887280 chr4:12580634 A/G 1.01E-6 118 38.23 57.27 12.78 KM Plot